Teamsite6 install Problem

System

Installed TS6 over 5.5.2 SP3 and now I cannot get the login screen to come up. I got the error that I had some kind of problem with the webapps and that I should run install_webapps.ipl -f -r due to errors. When I ran it in a command window I got some obscure java compile error. I rebooted the server and then ran the command again and it ran fine. I then try to login and I keep getting Tomcat errors stating that it cannot find the jsps. Any ideas?

Thanks
Mark